Browsing Experimentally Confirmed database

Result: Your query found 7 resistance gene(s) from the BacMet Experimentally Confirmed database

Gene_nameExperimentally Verified Resistance Gene InformationPredicted Resistance Gene Information
arsH
  • BacMet ID: BAC0595
  • Code for: Enzyme
  • Family: NADPH-dependent FMN reductases family
  • Sequence: FASTA
  • Cross-database IDs: Link
  • Organism: Synechocystis sp. PCC 6803
  • Location: Chromosome
  • Compound: Menadione [class: Naphthoquinone]
  • Description: ArsH from Synechocystis sp. does not cofer resistance to arsenic (reduction of arsenate) as the arsH of Synechocystis sp. lacks cyestein residues. arsH encodes an NADPH-flavin mononucleotide oxidoreductase. ArsH plays a role in the response to oxidative stress caused by arsenite.
  • Length (amino acid): 206
  • Reference: Hervas et al. 2012; Pubmed- 22304305, Lopez-Maury et al. 2003; Pubmed- 12949088

  • Similar resistance genes in 'BacMet Predicted database'
    chrB
  • BacMet ID: BAC0027
  • Code for: Regulator
  • Family: Contains 1 Chromate resistance exported protein domain
  • Sequence: FASTA
  • Cross-database IDs: Link
  • Organism: Ochrobactrum tritici
  • Location: Chromosome (transposon TnOtChr)
  • Compound: Chromium (Cr), Methyl Viologen [class: Paraquat], Menadione [class: Naphthoquinone]
  • Description: Part of chrBACF operon from the transposable element TnOtChr. Has a regulatory role for expression of the ChrA transporter.
  • Length (amino acid): 312
  • Reference: Branco et al. 2013; Pubmed- 24223748, Branco et al. 2008; Pubmed- 18776016

  • Similar resistance genes in 'BacMet Predicted database'
    chrC
  • BacMet ID: BAC0028
  • Code for: Enzyme
  • Family: Iron/manganese superoxide dismutase family
  • Sequence: FASTA
  • Cross-database IDs: Link
  • Organism: Ochrobactrum tritici
  • Location: Chromosome (transposon TnOtChr)
  • Compound: Chromium (Cr), Methyl Viologen [class: Paraquat], Menadione [class: Naphthoquinone]
  • Description: Part of chrBACF operon from the transposable element TnOtChr. ChrC encodes a superoxide dismutase.
  • Length (amino acid): 202
  • Reference: Branco et al. 2008; Pubmed- 18776016

  • Similar resistance genes in 'BacMet Predicted database'
    chrF
  • BacMet ID: BAC0029
  • Code for: Unknown
  • Family: Contains 1 Chromate resistance exported protein domain
  • Sequence: FASTA
  • Cross-database IDs: Link
  • Organism: Ochrobactrum tritici
  • Location: Chromosome (transposon TnOtChr)
  • Compound: Chromium (Cr), Methyl Viologen [class: Paraquat], Menadione [class: Naphthoquinone]
  • Description: Part of chrBACF operon from the transposable element TnOtChr.
  • Length (amino acid): 150
  • Reference: Branco et al. 2008; Pubmed- 18776016

  • Similar resistance genes in 'BacMet Predicted database'
    ideR
  • BacMet ID: BAC0498
  • Code for: Regulator
  • Family: Contains 1 HTH dtxR-type DNA-binding domain
  • Sequence: FASTA
  • Cross-database IDs: Link
  • Organism: Mycobacterium tuberculosis
  • Location: Chromosome
  • Compound: Iron (Fe), Hydrogen Peroxide (H2O2) [class: Peroxides], Plumbagin [class: Naphthoquinone]
  • Description: Metal-dependent DNA-binding protein that controls transcription of many genes involved in iron metabolism. Acts as a repressor of siderophore biosynthesis and as a Positive modulator of iron storage. Also regulates expression of transporters, proteins involved in siderophore synthesis, iron storage and transcriptional regulators. Has a role in oxidative streee tolerance.
  • Length (amino acid): 230
  • Reference: Rodriguez et al. 2002; Pubmed- 12065475

  • Similar resistance genes in 'BacMet Predicted database'
    tolC
  • BacMet ID: BAC0393
  • Code for: Efflux
  • Family: RND Superfamily, OMP family
  • Sequence: FASTA
  • Cross-database IDs: Link
  • Organism: Escherichia coli (strain K12)
  • Location: Chromosome
  • Compound: Phenol [class: Phenolic compounds], Triclosan [class: Phenolic compounds], Sodium Deoxycholate (SDC) [class: Acid], Sodium Cholate [class: Acid], Sodium Taurodeoxycholate [class: Acid], Sodium Dodecyl Sulfate (SDS) [class: Organo-sulfate], Proflavin [class: Acridine], Acriflavine [class: Acridine], Ethidium Bromide [class: Phenanthridine], Tetraphenylphosphonium (TPP) [class: Quaternary Ammonium Compounds (QACs)], Rhodamine 6G [class: Xanthene], Tetraphenylarsonium (TPA) [class: Quaternary Ammonium Compounds (QACs)], Cetrimide (CTM) [class: Quaternary Ammonium Compounds (QACs)], Dequalinium [class: Quaternary Ammonium Compounds (QACs)], Benzylkonium Chloride (BAC) [class: Quaternary Ammonium Compounds (QACs)], Plumbagin [class: Naphthoquinone]
  • Description: Required for proper expression of outer membrane protein genes such as ompF, nmpC, protein 2, hemolysin, colicin V, or colicin E1. May be specialized for signal sequence independent, extracellular secretion in Gram-negative bacteria. Required for acrAB, mar efflux pumps to act as multidrug efflux pump.
  • Length (amino acid): 493
  • Reference: Hackett et al. 1983; Pubmed- 6312426, Fralick et al. 1996; Pubmed- 8824631, Sulavik et al. 2001; Pubmed- 11257026

  • Similar resistance genes in 'BacMet Predicted database'
    tolCsm
  • BacMet ID: BAC0507
  • Code for: Efflux
  • Family: RND superfamily, OMP family
  • Sequence: FASTA
  • Cross-database IDs: Link
  • Organism: Stenotrophomonas maltophilia (strain K279a)
  • Location: Chromosome
  • Compound: Acriflavine [class: Acridine], Carbonyl cyanide 3-chlorophenylhydrazone (CCCP) [class: Hydrazone], Crystal Violet [class: Triarylmethane], Methyl Viologen [class: Paraquat], Plumbagin [class: Naphthoquinone], Sodium Dodecyl Sulfate (SDS) [class: Organo-sulfate], Tetrachlorosalicylanilide (TCS) [class: Salicylanilide], Menadione [class: Naphthoquinone]
  • Description: Outer membrane protein. pcm and tolCsm genes form an operon. A significant feature of TolCsm different from that of other tolC homologues of Enterobacteriaceae is that tolCsm is not transcribed alone, but is transcribed with the pcm gene.
  • Length (amino acid): 452
  • Reference: Huang et al. 2013; Pubmed- 23629016

  • Similar resistance genes in 'BacMet Predicted database'

    BacMet database and website is designed and maintained by Chandan Pal

    Copyright © 2013-2016 All rights reserved

    GU logo