Browsing Experimentally Confirmed database

Result: Your query found 6 resistance gene(s) from the BacMet Experimentally Confirmed database

Gene_nameExperimentally Verified Resistance Gene InformationPredicted Resistance Gene Information
PA0320
  • BacMet ID: BAC0297
  • Code for: Unknown
  • Family: Bacterial OB fold (BOF) protein family
  • Sequence: FASTA
  • Cross-database IDs: Link
  • Organism: Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
  • Location: Chromosome
  • Compound: Cadmium (Cd), Mercury (Hg), Tributyltin (TBT) [class: Organo-tin], Hydrogen Peroxide (H2O2) [class: Peroxides], Hydrochloric acid (HCl) [class: Acid]
  • Description: TBT resistance gene PA0320; homologous to YgiW; PA0320 plays a certain role in stress tolerance against TBT as well as in stressors producing reactive oxygen species
  • Length (amino acid): 116
  • Reference: Fukushima et al. 2012; Pubmed- 22990488

  • Similar resistance genes in 'BacMet Predicted database'
    tbtA
  • BacMet ID: BAC0379
  • Code for: Efflux
  • Family: RND superfamily, MFP family
  • Sequence: FASTA
  • Cross-database IDs: Link
  • Organism: Pseudomonas stutzeri (Pseudomonas perfectomarina)
  • Location: Chromosome
  • Compound: Tributyltin (TBT) [class: Organo-tin], n-hexane [class: Alkane]
  • Description: Tributyltin chloride resistance membrane fusion protein TbtA; has 4 characteristic motifs A, B, C and D; part of the tbtABM efflux system
  • Length (amino acid): 382
  • Reference: Fukagawa et al. 1993; Pubmed- 8343157, Jude et al. 2004; Pubmed- 15019728

  • Similar resistance genes in 'BacMet Predicted database'
    tbtB
  • BacMet ID: BAC0380
  • Code for: Efflux
  • Family: RND superfamily, AcrB/AcrD/AcrF family
  • Sequence: FASTA
  • Cross-database IDs: Link
  • Organism: Pseudomonas stutzeri (Pseudomonas perfectomarina)
  • Location: Chromosome
  • Compound: Tributyltin (TBT) [class: Organo-tin], n-hexane [class: Alkane]
  • Description: Resistance nodulation cell division family member TbtB; Aanalogous to proton dependent efflux pump belonging to RND family; part of the tbtABM efflux system
  • Length (amino acid): 1046
  • Reference: Fukagawa et al. 1993; Pubmed- 8343157, Jude et al. 2004; Pubmed- 15019728

  • Similar resistance genes in 'BacMet Predicted database'
    tbtM
  • BacMet ID: BAC0381
  • Code for: Efflux
  • Family: RND Superfamily, OMP family
  • Sequence: FASTA
  • Cross-database IDs: Link
  • Organism: Pseudomonas stutzeri
  • Location: Chromosome
  • Compound: Tributyltin (TBT) [class: Organo-tin], n-hexane [class: Alkane]
  • Description: Outer membrane protein TbtM, part of the tbtABM efflux system
  • Length (amino acid): 476
  • Reference: Fukagawa et al. 1993; Pubmed- 8343157, Jude et al. 2004; Pubmed- 15019728

  • Similar resistance genes in 'BacMet Predicted database'
    tbtR
  • BacMet ID: BAC0382
  • Code for: Regulator
  • Family: Contains 1¬†HTH iclR-type DNA-binding domain
  • Sequence: FASTA
  • Cross-database IDs: Link
  • Organism: Pseudomonas stutzeri¬†
  • Location: Chromosome
  • Compound: Tributyltin (TBT) [class: Organo-tin], n-hexane [class: Alkane]
  • Description: Efflux pump regulator; a potential regulatory gene of tbtABM, named tbtR, is identified upstream of the operon; TbtR exhibited many similarities with other repressors of the RND efflux systems
  • Length (amino acid): 259
  • Reference: Fukagawa et al. 1993; Pubmed- 8343157, Jude et al. 2004; Pubmed- 15019728

  • Similar resistance genes in 'BacMet Predicted database'
    ygiW
  • BacMet ID: BAC0445
  • Code for: Unknown
  • Family: Bacterial OB fold (BOF) protein family
  • Sequence: FASTA
  • Cross-database IDs: Link
  • Organism: Escherichia coli
  • Location: Plasmid pMR-1 (Shewanella oneidensis (strain MR-1))
  • Compound: Cadmium (Cd), Tributyltin (TBT) [class: Organo-tin], Hydrogen Peroxide (H2O2) [class: Peroxides]
  • Description: Protein YgiW; located in periplasm; responsible for tributyltin (TBT) resistance; response to hydrogen peroxide (H2O2), cadmium ions ; has a role in biofim formation
  • Length (amino acid): 130
  • Reference: Lee et al. 2010; Pubmed- 19919618

  • Similar resistance genes in 'BacMet Predicted database'

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