Gene_name | Experimentally Verified Resistance Gene Information | Predicted Resistance Gene Information |
chrR | BacMet ID: BAC0538Code for:
EnzymeFamily: NADH_dh2 familySequence: FASTACross-database IDs: LinkOrganism: Pseudomonas putidaLocation:
ChromosomeCompound: Chromium (Cr), Iron (Fe), Hydrogen Peroxide (H2O2) [class: Peroxides], 2,6-dichloroindophenol [class: Phenolic Compounds]Description: A soluble quinone reductase of Pseudomonas putida that defends against H2O2. ChrR is a dimeric flavin mononucleotide-binding flavoprotein that is able to catalyze a full reduction of Cr(VI) to Cr(III). ChrR may also contribute to the survival of P. putida in the environment by preventing redox cycling of soluble quinones. Confers resistance to Pottasium Ferricyanide (Fe++ salt) as well.Length (amino acid):
186Reference: Gonzalez et al. 2005; Pubmed- 15840577, Ackerley et al. 2004; Pubmed- 14766567, Park et al. 2000; Pubmed- 10788340
| Similar
resistance genes in 'BacMet Predicted database' |
cpxA | BacMet ID: BAC0532Code for:
RegulatorFamily: Contains 1 histidine kinase domainSequence: FASTACross-database IDs: LinkOrganism: Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044Location:
ChromosomeCompound: Hydrogen Peroxide (H2O2) [class: Peroxides], Benzylkonium Chloride (BAC) [class: Quaternary Ammonium Compounds (QACs)], Chlorhexidine [class: Biguanides]Description: Sensor protein of stress-related two-component regulatory system of CpxAR. It has role in oxidative stress tolerance. It has a regulatory role on MDR efflux pumps. It can confer resistance to cefepime, cefotaxime, ceftazidime and chloramphenicol which possibly are the preferred substrates of the resistance determinants for e.g. efflux pumps perhaps regulated by the Cpx regulon.Length (amino acid):
457Reference: Srinivasan et al. 2012; Pubmed- 22496764
| Similar
resistance genes in 'BacMet Predicted database' |
cpxR | BacMet ID: BAC0533Code for:
RegulatorFamily: Contains 1 response regulator domainSequence: FASTACross-database IDs: LinkOrganism: Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044Location:
ChromosomeCompound: Hydrogen Peroxide (H2O2) [class: Peroxides], Benzylkonium Chloride (BAC) [class: Quaternary Ammonium Compounds (QACs)], Chlorhexidine [class: Biguanides]Description: Response regulator of stress-related two-component regulatory system. It has role in oxidative stress tolerance. It has a regulatory role on MDR efflux pumps. It can confer resistance to cefepime, cefotaxime, ceftazidime and chloramphenicol which possibly are the preferred substrates of the resistance determinants for e.g. efflux pumps perhaps regulated by the Cpx regulon.Length (amino acid):
232Reference: Srinivasan et al. 2012; Pubmed- 22496764
| Similar
resistance genes in 'BacMet Predicted database' |
cuiD | BacMet ID: BAC0106Code for:
EnzymeFamily: Multicopper oxidase (MCO) familySequence: FASTACross-database IDs: LinkOrganism: Salmonella enterica serovar TyphimuriumLocation:
ChromosomeCompound: Copper (Cu), Hydrogen Peroxide (H2O2) [class: Peroxides]Description: A multi-copper oxidase gene code for Cu-inducible periplasmic protein; CuiD is required for both copper homeostasis and the copper resistance response in the presence and in the absence of oxygen; Probably involved in periplasmic detoxification of copper by oxidizing Cu+ to Cu2+ and thus preventing its uptake into the cytoplasm; cuiD may be involved in oxidative stress responseLength (amino acid):
536Reference: Lim et al 2002; Pubmed- 12442888
| Similar
resistance genes in 'BacMet Predicted database' |
dpr/dps | BacMet ID: BAC0134Code for:
Binding proteinFamily: Dps famailySequence: FASTACross-database IDs: LinkOrganism: Streptococcus suisLocation:
ChromosomeCompound: Iron (Fe), Hydrogen Peroxide (H2O2) [class: Peroxides]Description: DNA protection during starvation protein; Protects DNA from oxidative damage by sequestering intracellular Fe2+ ion and storing it in the form of Fe3+ oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe2+ ions, which prevents hydroxyl radical production by the Fenton reaction. It binds and incorporates Fe2+ iron. Is responsible for hydrogen peroxide resistance. Does not bind DNA.Length (amino acid):
172Reference: Pulliainen et al. 2005; Pubmed- 16091046
| Similar
resistance genes in 'BacMet Predicted database' |
dpsA | BacMet ID: BAC0135Code for:
Binding proteinFamily: Dps famailySequence: FASTACross-database IDs: LinkOrganism: Burkholderia pseudomallei 1710bLocation:
ChromosomeCompound: Iron (Fe), Hydrogen Peroxide (H2O2) [class: Peroxides]Description: dpsA respsonses to stress, iron-binding protein; has role in iron ion homeostasisLength (amino acid):
162Reference: Loprasert et al. 2004; Pubmed- 15241582
| Similar
resistance genes in 'BacMet Predicted database' |
fetA/ybbL | BacMet ID: BAC0165Code for:
Binding proteinFamily: ABC transporter superfamilySequence: FASTACross-database IDs: LinkOrganism: Escherichia coli (strain K12)Location:
ChromosomeCompound: Iron (Fe), Hydrogen Peroxide (H2O2) [class: Peroxides]Description: FetA, the ATP binding component subunit; FetAB allows for increased resistance to oxidative stress in the presence of ironLength (amino acid):
225Reference: Nicolaou et al. 2013; Pubmed- 24038693
| Similar
resistance genes in 'BacMet Predicted database' |
fetB/ybbM | BacMet ID: BAC0166Code for:
Membrane proteinFamily: ABC transporter superfamilySequence: FASTACross-database IDs: LinkOrganism: Escherichia coli (strain K12)Location:
ChromosomeCompound: Iron (Fe), Hydrogen Peroxide (H2O2) [class: Peroxides]Description: FetB/YbbM is a membrane protein. FetAB allows for increased resistance to oxidative stress in the presence of ironLength (amino acid):
259Reference: Nicolaou et al. 2013; Pubmed- 24038693
| Similar
resistance genes in 'BacMet Predicted database' |
frnE | BacMet ID: BAC0170Code for:
EnzymeFamily: Cation diffusion facilitator (CDF) transporter familySequence: FASTACross-database IDs: LinkOrganism: Deinococcus radioduransLocation:
ChromosomeCompound: Cadmium (Cd), Hydrogen Peroxide (H2O2) [class: Peroxides]Description: Disulfide Isomerase Chaperone; It is a protein disulfide isomerase in vitro and has a role in oxidative stress tolerance of D. radiodurans possibly by protecting the damaged cellular proteins from inactivation; is a protein disulfide isomerase in vitro and has a role in oxidative stress tolerance of D. radiodurans possibly by protecting the damaged cellular proteins from inactivationLength (amino acid):
252Reference: Khairnar et al. 2013; Pubmed- 23603741
| Similar
resistance genes in 'BacMet Predicted database' |
ibpA | BacMet ID: BAC0194Code for:
Heat shock proteinFamily: Small heat shock protein (HSP20)Sequence: FASTACross-database IDs: LinkOrganism: Escherichia coli (strain K12)Location:
ChromosomeCompound: Hydrogen Peroxide (H2O2) [class: Peroxides]Description: Small heat shock protein IbpA; Associates with aggregated proteins, together with IbpB, to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; Its activity is ATP-independentLength (amino acid):
137Reference: Kitagawa et al. 2000; Pubmed- 10713416
| Similar
resistance genes in 'BacMet Predicted database' |
ibpB | BacMet ID: BAC0195Code for:
Heat shock proteinFamily: Small heat shock protein (HSP20)Sequence: FASTACross-database IDs: LinkOrganism: Escherichia coli (strain K12)Location:
ChromosomeCompound: Hydrogen Peroxide (H2O2) [class: Peroxides]Description: Small heat shock protein IbpA; Associates with aggregated proteins, together with IbpA, to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress. Its activity is ATP-independent.Length (amino acid):
142Reference: Kitagawa et al. 2000; Pubmed- 10713416
| Similar
resistance genes in 'BacMet Predicted database' |
ideR | BacMet ID: BAC0498Code for:
RegulatorFamily: Contains 1 HTH dtxR-type DNA-binding domainSequence: FASTACross-database IDs: LinkOrganism: Mycobacterium tuberculosisLocation:
ChromosomeCompound: Iron (Fe), Hydrogen Peroxide (H2O2) [class: Peroxides], Plumbagin [class: Naphthoquinone]Description: Metal-dependent DNA-binding protein that controls transcription of many genes involved in iron metabolism. Acts as a repressor of siderophore biosynthesis and as a Positive modulator of iron storage. Also regulates expression of transporters, proteins involved in siderophore synthesis, iron storage and transcriptional regulators. Has a role in oxidative streee tolerance.Length (amino acid):
230Reference: Rodriguez et al. 2002; Pubmed- 12065475
| Similar
resistance genes in 'BacMet Predicted database' |
kpnE | BacMet ID: BAC0476Code for:
EffluxFamily: Small multidrug resistance (SMR) familySequence: FASTACross-database IDs: LinkOrganism: Klebsiella pneumoniae NTUH-K2044Location:
ChromosomeCompound: Sodium Dodecyl Sulfate (SDS) [class: Organo-sulfate], Sodium Deoxycholate (SDC) [class: Acid], Benzylkonium Chloride (BAC) [class: Quaternary Ammonium Compounds (QACs)], Chlorhexidine [class: Biguanides], Triclosan [class: Phenolic compounds], Methyl Viologen [class: Paraquat], Hydrogen Peroxide (H2O2) [class: Peroxides]Description: KpnEF is a EbrAB homolog. kpnEF is involved in oxidative stress tolerance, nitrosative stress tolerance, heat stress tolerance, osmotic stress toerance etc. in Klebsiella pneumoniae. It can confer resistance to antibiotics such as cefepime, ceftriaxone, colistin, erythromycin, rifamycin, tetracycline and streptomycin. Length (amino acid):
120Reference: Srinivasan et al. 2013; Pubmed- 23836167
| Similar
resistance genes in 'BacMet Predicted database' |
kpnF | BacMet ID: BAC0477Code for:
EffluxFamily: Small multidrug resistance (SMR) familySequence: FASTACross-database IDs: LinkOrganism: Klebsiella pneumoniae NTUH-K2044Location:
ChromosomeCompound: Sodium Dodecyl Sulfate (SDS) [class: Organo-sulfate], Sodium Deoxycholate (SDC) [class: Acid], Benzylkonium Chloride (BAC) [class: Quaternary Ammonium Compounds (QACs)], Chlorhexidine [class: Biguanides], Triclosan [class: Phenolic compounds], Methyl Viologen [class: Paraquat], Hydrogen Peroxide (H2O2) [class: Peroxides]Description: KpnEF is a EbrAB homolog. kpnEF is involved in oxidative stress tolerance, nitrosative stress tolerance, heat stress tolerance, osmotic stress toerance etc. in Klebsiella pneumoniae. It can confer resistance to antibiotics such as cefepime, ceftriaxone, colistin, erythromycin, rifamycin, tetracycline and streptomycinLength (amino acid):
109Reference: Srinivasan et al. 2013; Pubmed- 23836167
| Similar
resistance genes in 'BacMet Predicted database' |
kpnO | BacMet ID: BAC0529Code for:
PorinFamily: RND superfamily, OMP familySequence: FASTACross-database IDs: LinkOrganism: Klebsiella pneumoniae NTUH-K2044Location:
ChromosomeCompound: Hydrogen Peroxide (H2O2) [class: Peroxides], Carbonyl cyanide 3-chlorophenylhydrazone (CCCP) [class: Hydrazone], Benzylkonium Chloride (BAC) [class: Quaternary Ammonium Compounds (QACs)], Chlorhexidine [class: Biguanides], Sodium Nitrite (NaNo2) [class: Nitrites]Description: KpnO codes for a outer membrane porin. kpnO mediates antibiotic resistance via efflux mechanism and contributes towards disinfectant tolerance. It has a role in oxidative stress tolerance and nitrostative stress tolernace. KpnO also contributes to growth and gastrointestinal stress tolerance in K. pneumoniae.Length (amino acid):
365Reference: Srinivasan et al. 2012; Pubmed- 22848515
| Similar
resistance genes in 'BacMet Predicted database' |
mntP/yebN | BacMet ID: BAC0252Code for:
EffluxFamily: MntP familySequence: FASTACross-database IDs: LinkOrganism: Escherichia coli K-12Location:
ChromosomeCompound: Manganese (Mn), Magnesium (Mg), Methyl Viologen [class: Paraquat], Hydrogen Peroxide (H2O2) [class: Peroxides]Description: MntP; Functions as a manganese efflux pumpLength (amino acid):
188Reference: Li et al. 2011; Pubmed- 21789199, Waters et al. 2011; Pubmed- 21908668
| Similar
resistance genes in 'BacMet Predicted database' |
oxyRkp | BacMet ID: BAC0536Code for:
RegulatorFamily: LysR-familySequence: FASTACross-database IDs: LinkOrganism: Klebsiella pneumoniae NTUH-K2044Location:
ChromosomeCompound: Hydrogen Peroxide (H2O2) [class: Peroxides], Sodium Deoxycholate (SDC) [class: Acid], Acriflavine [class: Acridine], Rhodamine 6G [class: Xanthene], Ethidium Bromide [class: Phenanthridine], Sodium Dodecyl Sulfate (SDS) [class: Organo-sulfate]Description: Activator of hydrogen peroxide-inducible genes. It has contributory role towards varied stress tolerance in K. pneumoniae.Length (amino acid):
305Reference: Srinivasan et al. 2013; Pubmed- 23619002
| Similar
resistance genes in 'BacMet Predicted database' |
PA0320 | BacMet ID: BAC0297Code for:
UnknownFamily: Bacterial OB fold (BOF) protein familySequence: FASTACross-database IDs: LinkOrganism: Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)Location:
ChromosomeCompound: Cadmium (Cd), Mercury (Hg), Tributyltin (TBT) [class: Organo-tin], Hydrogen Peroxide (H2O2) [class: Peroxides], Hydrochloric acid (HCl) [class: Acid]Description: TBT resistance gene PA0320; homologous to YgiW; PA0320 plays a certain role in stress tolerance against TBT as well as in stressors producing reactive oxygen speciesLength (amino acid):
116Reference: Fukushima et al. 2012; Pubmed- 22990488
| Similar
resistance genes in 'BacMet Predicted database' |
perR | BacMet ID: BAC0310Code for:
RegulatorFamily: Fur familySequence: FASTACross-database IDs: LinkOrganism: Staphylococcus aureus (strain NCTC 8325)Location:
ChromosomeCompound: Hydrogen Peroxide (H2O2) [class: Peroxides]Description: Peroxide-responsive repressor PerR; Manganese-dependent repressor that controls a regulon of oxidative stress resistance and iron-storage proteins. Regulates expression of genes encoding antioxidant proteins, such as katA, ahpCF, bcp and trxB. Also regulates expression of the iron-storage protein ftn, the ferritin-like protein mrgA, the ferric uptake regulator fur, the manganese transporter operon mntABC, and its own expression. May act as a hydrogen peroxide and organic hydroperoxide sensor. Required for full virulence in a murine skin abscess model of infectionLength (amino acid):
148Reference: Horsburgh et al. 2001; Pubmed- 11349039
| Similar
resistance genes in 'BacMet Predicted database' |
sitA | BacMet ID: BAC0349Code for:
Binding proteinFamily: ABC superfamily ( bacterial solute-binding protein 9 family)Sequence: FASTACross-database IDs: LinkOrganism: Escherichia coli O45:K1 (strain S88 / ExPEC)Location:
Plasmid pECOS88 (Escherichia coli O45:K1 (strain S88 / ExPEC)), Plasmid pCVM29188_146 (Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188)Compound: Manganese (Mn), Iron (Fe), Hydrogen Peroxide (H2O2) [class: Peroxides]Description: Iron/Mn transport protein, periplasmic-binding protein SitA; sitA gene encodes a periplasmic binding proteinLength (amino acid):
305Reference: Kehres et al. 2002; Pubmed- 12029031, Sabri et al. 2006; Pubmed- 16514154
| Similar
resistance genes in 'BacMet Predicted database' |
sitB | BacMet ID: BAC0350Code for:
Binding proteinFamily: ABC superfamilySequence: FASTACross-database IDs: LinkOrganism: Escherichia coli (strain SMS-3-5 / SECEC)Location:
Plasmid pSMS35_130 (Escherichia coli (strain SMS-3-5 / SECEC)), Plasmid pCS0010A (Salmonella enterica subsp. enterica serovar Kentucky)Compound: Manganese (Mn), Iron (Fe), Hydrogen Peroxide (H2O2) [class: Peroxides]Description: sitB encodes an ATP-binding proteinLength (amino acid):
273Reference: Kehres et al. 2002; Pubmed- 12029031, Sabri et al. 2006; Pubmed- 16514154
| Similar
resistance genes in 'BacMet Predicted database' |
sitC | BacMet ID: BAC0351Code for:
EnzymeFamily: ABC superfamily ( ABC-3 integral membrane protein family)Sequence: FASTACross-database IDs: LinkOrganism: Escherichia coli (strain SMS-3-5 / SECEC)Location:
Plasmid pSMS35_130 (Escherichia coli (strain SMS-3-5 / SECEC)), Plasmid pPag3 (Pantoea vagans (strain C9-1) (Pantoea agglomerans (strain C9-1)))Compound: Manganese (Mn), Iron (Fe), Hydrogen Peroxide (H2O2) [class: Peroxides]Description: sitC encodes a permease (integral membrane protein); part of the sitABCD transport systemLength (amino acid):
286Reference: Kehres et al. 2002; Pubmed- 12029031, Sabri et al. 2006; Pubmed- 16514154
| Similar
resistance genes in 'BacMet Predicted database' |
sitD | BacMet ID: BAC0352Code for:
EnzymeFamily: ABC superfamily ( ABC-3 integral membrane protein family)Sequence: FASTACross-database IDs: LinkOrganism: Escherichia coli (strain SMS-3-5 / SECECLocation:
Plasmid pSMS35_130 (Escherichia coli (strain SMS-3-5 / SECEC)), Plasmid pPag3 (Pantoea vagans (strain C9-1) (Pantoea agglomerans (strain C9-1)))Compound: Manganese (Mn), Iron (Fe), Hydrogen Peroxide (H2O2) [class: Peroxides]Description: sitD encode a permease (integral membrane protein); part of the sitABCD transport systemLength (amino acid):
282Reference: Kehres et al. 2002; Pubmed- 12029031, Sabri et al. 2006; Pubmed- 16514154
| Similar
resistance genes in 'BacMet Predicted database' |
sodA | BacMet ID: BAC0368Code for:
EnzymeFamily: Iron/manganese superoxide dismutase familySequence: FASTACross-database IDs: LinkOrganism: Escherichia coli K12Location:
ChromosomeCompound: Selenium (Se), Hydrogen Peroxide (H2O2) [class: Peroxides]Description: Mn-dependent superoxide dismutase; Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems.Length (amino acid):
206Reference: Bebien et al. 2002; Pubmed- 11872706
| Similar
resistance genes in 'BacMet Predicted database' |
sodA | BacMet ID: BAC0705Code for:
EnzymeFamily: Iron/manganese superoxide dismutase familySequence: FASTACross-database IDs: LinkOrganism: Pseudomonas aeruginosaLocation:
ChromosomeCompound: Hydrogen Peroxide (H2O2) [class: Peroxides]Description: Mn-dependent superoxide dismutase; Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems.Length (amino acid):
203Reference: Hassett et al. 1993; Pubmed- 8244935
| Similar
resistance genes in 'BacMet Predicted database' |
sodB | BacMet ID: BAC0706Code for:
EnzymeFamily: Iron/manganese superoxide dismutase familySequence: FASTACross-database IDs: LinkOrganism: Pseudomonas aeruginosaLocation:
ChromosomeCompound: Hydrogen Peroxide (H2O2) [class: Peroxides]Description: Fe-dependent superoxide dismutase; Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems.Length (amino acid):
193Reference: Hassett et al. 1993; Pubmed- 8244935
| Similar
resistance genes in 'BacMet Predicted database' |
sodB | BacMet ID: BAC0707Code for:
EnzymeFamily: Iron/manganese superoxide dismutase familySequence: FASTACross-database IDs: LinkOrganism: Escherichia coli K12Location:
ChromosomeCompound: Selenium (Se), Hydrogen Peroxide (H2O2) [class: Peroxides]Description: Fe-dependent superoxide dismutase. Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems.Length (amino acid):
193Reference: Bebien et al. 2002; Pubmed- 11872706
| Similar
resistance genes in 'BacMet Predicted database' |
ychH | BacMet ID: BAC0434Code for:
UnknownFamily: Contains DUF2583 domainSequence: FASTACross-database IDs: LinkOrganism: Escherichia coli (strain K12)Location:
ChromosomeCompound: Cadmium (Cd), Hydrogen Peroxide (H2O2) [class: Peroxides]Description: Stress protein YchH; response to Hydrogen Peroxide (H2O2), cadmium; plays a role in biofilm formation as wellLength (amino acid):
92Reference: Lee et al. 2010; Pubmed- 19919618
| Similar
resistance genes in 'BacMet Predicted database' |
ydeI | BacMet ID: BAC0436Code for:
Binding proteinFamily: Bacterial OB fold (BOF) protein familySequence: FASTACross-database IDs: LinkOrganism: Escherichia coli (strain K12)Location:
ChromosomeCompound: Hydrogen Peroxide (H2O2) [class: Peroxides]Description: Stress protein YdeI; response to Hydrogen Peroxide (H2O2) and has a role in biofilm formationLength (amino acid):
130Reference: Lee et al. 2010; Pubmed- 19919618
| Similar
resistance genes in 'BacMet Predicted database' |
ygiW | BacMet ID: BAC0445Code for:
UnknownFamily: Bacterial OB fold (BOF) protein familySequence: FASTACross-database IDs: LinkOrganism: Escherichia coliLocation:
Plasmid pMR-1 (Shewanella oneidensis (strain MR-1))Compound: Cadmium (Cd), Tributyltin (TBT) [class: Organo-tin], Hydrogen Peroxide (H2O2) [class: Peroxides]Description: Protein YgiW; located in periplasm; responsible for tributyltin (TBT) resistance; response to hydrogen peroxide (H2O2), cadmium ions ; has a role in biofim formationLength (amino acid):
130Reference: Lee et al. 2010; Pubmed- 19919618
| Similar
resistance genes in 'BacMet Predicted database' |
yhcN | BacMet ID: BAC0446Code for:
UnknownFamily: BhsA/McbA familySequence: FASTACross-database IDs: LinkOrganism: Escherichia coli (strain K12)Location:
ChromosomeCompound: Cadmium (Cd), Hydrogen Peroxide (H2O2) [class: Peroxides], Hydrochloric acid (HCl) [class: Acid]Description: Outer membrane protein YhcN; stress response proteinLength (amino acid):
87Reference: Lee et al. 2010; Pubmed- 19919618
| Similar
resistance genes in 'BacMet Predicted database' |
yjaA | BacMet ID: BAC0447Code for:
UnknownFamily: UnknownSequence: FASTACross-database IDs: LinkOrganism: Escherichia coli (strain K12)Location:
ChromosomeCompound: Cadmium (Cd), Hydrogen Peroxide (H2O2) [class: Peroxides], Hydrochloric acid (HCl) [class: Acid]Description: Stress response protein YjaA; a YjaA mutant strain is sensitive to hydrogen peroxide and acidLength (amino acid):
127Reference: Lee et al. 2010; Pubmed- 19919618
| Similar
resistance genes in 'BacMet Predicted database' |
ymgB/ariR | BacMet ID: BAC0450Code for:
Binding proteinFamily: AriR familySequence: FASTACross-database IDs: LinkOrganism: Escherichia coli (strain K12)Location:
Plasmid pPag3 (Pantoea vagans (strain C9-1) (Pantoea agglomerans (strain C9-1)))Compound: Hydrochloric Acid (HCl) [class: Acid], Hydrogen Peroxide (H2O2) [class: Peroxides]Description: Two-component-system connector protein YmgB/AriR; a connector protein for RcsB/C regulation of biofilm and acid-resistance, providing additional signal input into the two-component signaling pathway. May serve to stimulate biofilm maturation, via the Rcs phosphorelay. Regulates expression of genes involved in acid-resistance and biofilm formation, including the RcsB/C two-component system. May be a non-specific DNA-binding protein that binds genes and/or intergenic regions via a geometric recognition. Also confers resistance to H2O2. Overexpression at 28 and 16 degrees Celsius increases the production of colanic acid, an exopolysaccharide and matrix component, and reduces adhesive curli fimbriae expression. Both of these effects require RcsB; YmgB probably acts upstream of the RcsB/C system to stimulate the activity and not transcription of RcsB/C. 5-fluorouracil reduction in biofilm formation requires this protein. Deletion increases biofilm formation.Length (amino acid):
88Reference: Lee et al. 2007; Pubmed- 17765265
| Similar
resistance genes in 'BacMet Predicted database' |
yodD | BacMet ID: BAC0451Code for:
UnknownFamily: Contains a DUF2525 domainSequence: FASTACross-database IDs: LinkOrganism: Escherichia coli (strain K12)Location:
ChromosomeCompound: Cadmium (Cd), Hydrogen Peroxide (H2O2) [class: Peroxides], Hydrochloric acid (HCl) [class: Acid]Description: Stress protein YodD; a yodD mutant strain is sensitive to hydrogen peroxide and acidLength (amino acid):
75Reference: Lee et al. 2010; Pubmed- 19919618
| Similar
resistance genes in 'BacMet Predicted database' |