BacMet Database

BacMet Experimentally Confirmed database

Result: Details of the source of prediction- srpC

Gene_name	Experimentally Verified Resistance Gene Information	Predicted Resistance Gene Information
srpC	BacMet ID: BAC0374 Code for: Efflux Family: RND Superfamily, OMP family Sequence: FASTA Cross-database IDs: Link Organism: Pseudomonas putida Location: Chromosome Compound: n-hexane [class: Alkane], Toluene [class: Aromatic hydrocarbons], Dimethylphthalate [class: Pthalate] Description: Solvent-resistant efflux pump outer membrane protein SrpC; The outer membrane component of an organic solvent efflux pump srpABC. Involved in export of a number of low log POW compounds including hexane (log POW 3.5), toluene (log POW 2.5) and dimethylphthalate (log POW 2.3). The solvent resistance phenotype has been postulated to depend on the operon expression level. Length (amino acid): 470 Reference: Kieboom et al. 1998; Pubmed- 9417051, Kieboom eta l. 1998; Pubmed- 9852029, Kim et al. 1998; Pubmed- 9658016	Similar resistance genes in 'BacMet Predicted database'
srpC	BacMet ID: BAC0152 Code for: Efflux Family: Chromate Ion Transporter (CHR) family Sequence: FASTA Cross-database IDs: Link Organism: Synechococcus elongatus strain PCC 7942 (Anacystis nidulans R2) Location: Plasmid pANL Compound: Chromium (Cr) Description: A homologue of chrA. SrpC is not a sulfate transporter. Functions as a transporter that extrudes chromate ions from cytoplasm under sulfur-deficient conditions. Length (amino acid): 393 Reference: Aguilar-Barajas et al. 2012; Pubmed- 22805806	Similar resistance genes in 'BacMet Predicted database'

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